Simon Gog, Martin Bader, Enno Ohlebusch GENESIS: Genome Evolution Scenarios
Bioinformatics, to appear.
[Preprint]
Enno Ohlebusch, Stefan Kurtz Space Efficient Computation of Rare Maximal Exact Matches
between Multiple Sequences
Journal of Computational Biology, 15(4):357-377, 2008.
[Preprint]
2007
Simon Gog, Martin Bader How to Achieve an Equivalent Simple Permutation in Linear
Time
Proceedings of the 5th Annual RECOMB Satellite Workshop on Comparative
Genomics, pages 58-68, LNCS 4751, 2007.
Mohamed Ibrahim Abouelhoda A Chaining Algorithm for Mapping cDNA Sequences to Multiple Genomic
Sequences
14th International Symposium on String Processing and Information
Retrieval, pages 1-13, LNCS 4726, 2007.
Martin Bader, Enno Ohlebusch Sorting by Weighted Reversals, Transpositions, and Inverted
Transpositions
Journal of Computational Biology, 14(5):615-636, 2007.
[Preprint]
Enno Ohlebusch, Mohamed Ibrahim Abouelhoda,
Kathrin Hockel A Linear Time Algorithm for the Inversion Median Problem in Circular
Bacterial Genomes
Journal of Discrete Algorithms, 5:637-646, 2007.
[Preprint]
Mohamed Ibrahim Abouelhoda, Stefan Kurtz,
Enno Ohlebusch Enhanced Suffix Arrays and Applications
Handbook of Computational Molecular Biology (Chapter 7), edited by
Srinivas Aluru, Chapman & Hall/CRC Computer
and Information Science Series, 2006.
[Preprint]
Enno Ohlebusch, Mohamed Ibrahim Abouelhoda Chaining Algorithms and Applications in Comparative Genomics
Handbook of Computational Molecular Biology (Chapter 15), edited by
Srinivas Aluru, Chapman & Hall/CRC Computer
and Information Science Series, 2006.
[Preprint]
2005
Christian Wawra, Mohamed Ibrahim Abouelhoda,
Enno Ohlebusch Efficient Mapping of Large cDNA/EST Databases to Genomes:
A Comparison of two Different Strategies
Proceedings of the German Conference on Bioinformatics,
pages 29-43, LNI 73, GI, 2005.
[Preprint]
Mohamed Ibrahim Abouelhoda, Enno Ohlebusch CHAINER: Software for Comparing Genomes
Short paper at ISMB/ECCB 2004
(12th International Conference on Intelligent Systems
for Molecular Biology/3rd European Conference on Computational Biology)
Michael Höhl, Stefan Kurtz, Enno Ohlebusch Efficient Multiple Genome Alignment
Proceedings of the 10th International Conference on Intelligent Systems
for Molecular Biology, in:
Bioinformatics, 18(Supplement 1):312-320, 2002.
